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Getting Started

  • README
  • How to use the GUI
  • When to adjust default settings
  • Files exported for Phy
  • Hardware recommendations
  • Drift correction

Tutorials

  • Example spike-sorting analysis with sample data
  • Creating a Kilosort4 probe dictionary
  • Loading other data formats with SpikeInterface
  • Using custom ‘good/mua’ labels
  • Example plots using kilosort.data_tools
  • Using Phy to assess and improve sorting results
  • Reproducing Kilosort4 benchmarks

Other Resources

  • Kilosort Video Lecture, 2023

Reference:

  • Kilosort4 API
Kilosort4
  • Index

Index

C | D | G | I | K | L | M | R | S

C

  • cluster_spikes() (in module kilosort.run_kilosort)
  • compute_drift_correction() (in module kilosort.run_kilosort)
  • compute_preprocessing() (in module kilosort.run_kilosort)

D

  • detect_spikes() (in module kilosort.run_kilosort)

G

  • get_run_parameters() (in module kilosort.run_kilosort)

I

  • initialize_ops() (in module kilosort.run_kilosort)

K

  • kilosort.run_kilosort
    • module

L

  • load_sorting() (in module kilosort.run_kilosort)

M

  • module
    • kilosort.run_kilosort

R

  • run_kilosort() (in module kilosort.run_kilosort)

S

  • save_sorting() (in module kilosort.run_kilosort)
  • set_files() (in module kilosort.run_kilosort)

© Copyright 2024, Marius Pachitariu, Jacob Pennington & Carsen Stringer.

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